Copyright (c) 2016 AJC
This work is licensed under a Creative Commons Attribution 4.0 International License.
Interaction of Monoamine Oxidase-B with a Series of Coumarin by Molecular Modeling Methods
Corresponding Author(s) : Said Ghalem
Asian Journal of Chemistry,
Vol. 28 No. 3 (2016): Vol 28 Issue 3
Abstract
Molecular docking studies were performed with UCSF Chimera, to derive the affinity and mode of binding of the inhibitors to the active site of the monoamine oxidase-B. The optimization of the geometry of monoamine oxidase-B was performed using the force field AMBERff03.r1 and calculations the energy by AutoDock Vina implanted in the UCSF Chimera software. This work is to study the inhibition of monoamine oxidase-B which is an enzyme involved in the Parkinson’s disease by methods of molecular modeling. These results will probably help in the development of an effective therapeutic tool in the fight against the development of Parkinson’s disease.
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- D.E. Edmondson, A. Mattevi, C. Binda, M. Li and F. Hubalek, Curr. Med. Chem., 11, 1983 (2004); doi:10.2174/0929867043364784.
- C. Binda, F. Hubalek, M. Li, D.E. Edmondson and A. Mattevi, FEBS Lett., 564, 225 (2004); doi:10.1016/S0014-5793(04)00209-1.
- M.B. Youdim, D. Edmondson and K.F. Tipton, Nat. Rev. Neurosci., 7, 295 (2006); doi:10.1038/nrn1883.
- M.B. Youdim, W.J. Geldenhuys and C.J. Van der Schyf, Parkinsonism Relat. Disord., 13(Suppl 3), S281 (2007); doi:10.1016/S1353-8020(08)70017-8.
- M. Bortolato, K. Chen and J.C. Shih, Adv. Drug Deliv. Rev., 60, 1527 (2008); doi:10.1016/j.addr.2008.06.002.
- H.H. Fernandez and J.J. Chen, Pharmacotherapy, 27, 174S (2007); doi:10.1592/phco.27.12part2.174S.
- L.-H. Mu, B. Wang, H.-Y. Ren, P. Liu, D.-H. Guo, F.-M. Wang, L. Bai and Y.-S. Guo, Bioorg. Med. Chem. Lett., 22, 3343 (2012); doi:10.1016/j.bmcl.2012.02.090.
- G. La Regina, R. Silvestri, V. Gatti, A. Lavecchia, E. Novellino, O. Befani, P. Turini and E. Agostinelli, Bioorg. Med. Chem., 16, 9729 (2008); doi:10.1016/j.bmc.2008.09.072.
- E.C. Hirsch, P. Jenner and S. Przedborski, Mov. Disord., 28, 24 (2013); doi:10.1002/mds.25032.
- M. Goedert, M.G. Spillantini, K. Del Tredici and H. Braak, Nat Rev Neurol., 9, 13 (2012); doi:10.1038/nrneurol.2012.242.
- P. Dusek, J. Jankovic and W. Le, Neurobiol. Dis., 46, 1 (2012); doi:10.1016/j.nbd.2011.12.054.
- P.G. Mastroberardino, E.K. Hoffman, M.P. Horowitz, R. Betarbet, G. Taylor, D. Cheng, H.M. Na, C.-A. Gutekunst, M. Gearing, J.Q. Trojanowski, M. Anderson, C.T. Chu, J. Peng and J.T. Greenamyre, Neurobiol. Dis., 34, 417 (2009); doi:10.1016/j.nbd.2009.02.009.
- M.B. Youdim, M. Fridkin and H. Zheng, Mech. Ageing Dev., 126, 317 (2005); doi:10.1016/j.mad.2004.08.023.
- S. Kansara, A. Trivedi, S. Chen, J. Jankovic and W. Le, J. Neural Transm., 120, 197 (2013); doi:10.1007/s00702-012-0840-9.
- D.A. Ostrov, J.A. Hernandez Prada, P.E. Corsino, K.A. Finton, N. Le and T.C. Rowe, Antimicrob. Agents Chemother., 51, 3688 (2007); doi:10.1128/AAC.00392-07.
- F. Chimenti, B. Bizzarri, A. Bolasco, D. Secci, P. Chimenti, A. Granese, S. Carradori, D. Rivanera, A. Zicari, M.M. Scaltrito and F. Sisto, Bioorg. Med. Chem. Lett., 20, 4922 (2010); doi:10.1016/j.bmcl.2010.06.048.
- I. Kostova, S. Bhatia, P. Grigorov, S. Balkansky, V. S. Parmar, A. K. Prasad and L. Saso, Curr. Med. Chem., 18, 3929 (2011); doi:10.2174/092986711803414395.
- S.J. Lee, U.S. Lee, W.J. Kim and S.K. Moon, Mol. Med. Rep., 4, 337 (2011); doi:10.3892/mmr.2011.420.
- T.A. De Almeida Barros, L.A.R. De Freitas, J.M.B. Filho, X.P. Nunes, A.M. Giulietti, G.E. De Souza, R.R. Dos Santos, M.B.P. Soares and C.F. Villarreal, J. Pharm. Pharmacol., 62, 205 (2010); doi:10.1211/jpp.62.02.0008.
- X.Y. Huang, Z.J. Shan, H.L. Zhai, L. Su and X.Y. Zhang, Chem. Biol. Drug Des., 78, 651 (2011); doi:10.1111/j.1747-0285.2011.01195.x.
- J.F. Vasconcelos, M.M. Teixeira, J.M. Barbosa-Filho, M.F. Agra, X.P. Nunes, A.M. Giulietti, R. Ribeiro-Dos-Santos and M.B. Soares, Eur. J. Pharmacol., 609, 126 (2009); doi:10.1016/j.ejphar.2009.03.027.
- J. Neyts, E.D. Clercq, R. Singha, Y.H. Chang, A.R. Das, S.K. Chakraborty, S.C. Hong, S.-C. Tsay, M.-H. Hsu and J.R. Hwu, Med. Chem., 52, 1486 (2009); doi:10.1021/jm801240d.
- B.S. Yun, I.N. Lee, I.J. Ryoo and I.D. Yoo, J. Nat. Prod., 64, 1238 (2001); doi:10.1021/np0100946.
- C. Gnerre, M. Catto, F. Leonetti, P. Weber, P.A. Carrupt, C. Altomare, A. Carotti and B.J. Testa, Med. Chem., 43, 4747 (2000); doi:10.1021/jm001028o.
- F. Borges, F. Roleira, N. Milhazes, E. Uriarte and L. Santana, Front. Med. Chem. Online, 4, 23 (2009).
- D. Viña, M.J. Matos, M. Yáñez, L. Santana and E. Uriarte, Med. Chem. Comm., 3, 213 (2012); doi:10.1039/C1MD00221J.
- G. Esteban, J. Allan, A. Samadi, A. Mattevi, M. Unzeta, J. Marco-Contelles, C. Binda and R.R. Ramsay, Biochim. Biophys. Acta, 1844, 1104 (2014); doi:10.1016/j.bbapap.2014.03.006.
- C.A. Lipinski, F. Lombardo, B.W. Dominy and P.J. Feeney, Adv. Drug Deliv. Rev., 46, 3 (2001); doi:10.1016/S0169-409X(00)00129-0.
- C.A. Lipinski, Drug Discov. Today. Technol., 1, 337 (2004); doi:10.1016/j.ddtec.2004.11.007.
- Z. Yang, K. Lasker, D. Schneidman-Duhovny, B. Webb, C.C. Huang, E.F. Pettersen, T.D. Goddard, E.C. Meng, A. Sali and T.E. Ferrin, J. Struct. Biol., 179, 269 (2012); doi:10.1016/j.jsb.2011.09.006.
- Y. Duan, C. Wu, S. Chowdhury, M.C. Lee, G. Xiong, W. Zhang, R. Yang, P. Cieplak, R. Luo, T. Lee, J. Caldwell, J. Wang and P. Kollman, J. Comput. Chem. CME, 24, 1999 (2003); doi:10.1002/jcc.10349.
- O. Trott and A.J. Olson, J. Comput. Chem., 31, 455 (2010); doi:10.1002/jcc.21334.
- K. Hu, L. Zhang, X. Li and S. Zhao, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 878, 3156 (2010); doi:10.1016/j.jchromb.2010.09.030.
- M.B.H. Youdim and P.F. Riederer, Neurology, 63, S32 (2004); doi:10.1212/WNL.63.7_suppl_2.S32.
- A. Samadi, M. de la Fuente Revenga, C. Pérez, I. Iriepa, I. Moraleda, M.I. Rodríguez-Franco and J. Marco-Contelles, Eur. J. Med. Chem., 67, 64 (2013); doi:10.1016/j.ejmech.2013.06.021.
- H. Ayachi, M. Merad and S. Ghalem, Int. J. Pharm. Sci. Rev. Res., 23, 87 (2013).
- W. Soufi, M. Merad, F. Boukli and S. Ghalem, Adv. Mol. Imaging, 1, 17 (2011); doi:10.4236/ami.2011.12003.
References
D.E. Edmondson, A. Mattevi, C. Binda, M. Li and F. Hubalek, Curr. Med. Chem., 11, 1983 (2004); doi:10.2174/0929867043364784.
C. Binda, F. Hubalek, M. Li, D.E. Edmondson and A. Mattevi, FEBS Lett., 564, 225 (2004); doi:10.1016/S0014-5793(04)00209-1.
M.B. Youdim, D. Edmondson and K.F. Tipton, Nat. Rev. Neurosci., 7, 295 (2006); doi:10.1038/nrn1883.
M.B. Youdim, W.J. Geldenhuys and C.J. Van der Schyf, Parkinsonism Relat. Disord., 13(Suppl 3), S281 (2007); doi:10.1016/S1353-8020(08)70017-8.
M. Bortolato, K. Chen and J.C. Shih, Adv. Drug Deliv. Rev., 60, 1527 (2008); doi:10.1016/j.addr.2008.06.002.
H.H. Fernandez and J.J. Chen, Pharmacotherapy, 27, 174S (2007); doi:10.1592/phco.27.12part2.174S.
L.-H. Mu, B. Wang, H.-Y. Ren, P. Liu, D.-H. Guo, F.-M. Wang, L. Bai and Y.-S. Guo, Bioorg. Med. Chem. Lett., 22, 3343 (2012); doi:10.1016/j.bmcl.2012.02.090.
G. La Regina, R. Silvestri, V. Gatti, A. Lavecchia, E. Novellino, O. Befani, P. Turini and E. Agostinelli, Bioorg. Med. Chem., 16, 9729 (2008); doi:10.1016/j.bmc.2008.09.072.
E.C. Hirsch, P. Jenner and S. Przedborski, Mov. Disord., 28, 24 (2013); doi:10.1002/mds.25032.
M. Goedert, M.G. Spillantini, K. Del Tredici and H. Braak, Nat Rev Neurol., 9, 13 (2012); doi:10.1038/nrneurol.2012.242.
P. Dusek, J. Jankovic and W. Le, Neurobiol. Dis., 46, 1 (2012); doi:10.1016/j.nbd.2011.12.054.
P.G. Mastroberardino, E.K. Hoffman, M.P. Horowitz, R. Betarbet, G. Taylor, D. Cheng, H.M. Na, C.-A. Gutekunst, M. Gearing, J.Q. Trojanowski, M. Anderson, C.T. Chu, J. Peng and J.T. Greenamyre, Neurobiol. Dis., 34, 417 (2009); doi:10.1016/j.nbd.2009.02.009.
M.B. Youdim, M. Fridkin and H. Zheng, Mech. Ageing Dev., 126, 317 (2005); doi:10.1016/j.mad.2004.08.023.
S. Kansara, A. Trivedi, S. Chen, J. Jankovic and W. Le, J. Neural Transm., 120, 197 (2013); doi:10.1007/s00702-012-0840-9.
D.A. Ostrov, J.A. Hernandez Prada, P.E. Corsino, K.A. Finton, N. Le and T.C. Rowe, Antimicrob. Agents Chemother., 51, 3688 (2007); doi:10.1128/AAC.00392-07.
F. Chimenti, B. Bizzarri, A. Bolasco, D. Secci, P. Chimenti, A. Granese, S. Carradori, D. Rivanera, A. Zicari, M.M. Scaltrito and F. Sisto, Bioorg. Med. Chem. Lett., 20, 4922 (2010); doi:10.1016/j.bmcl.2010.06.048.
I. Kostova, S. Bhatia, P. Grigorov, S. Balkansky, V. S. Parmar, A. K. Prasad and L. Saso, Curr. Med. Chem., 18, 3929 (2011); doi:10.2174/092986711803414395.
S.J. Lee, U.S. Lee, W.J. Kim and S.K. Moon, Mol. Med. Rep., 4, 337 (2011); doi:10.3892/mmr.2011.420.
T.A. De Almeida Barros, L.A.R. De Freitas, J.M.B. Filho, X.P. Nunes, A.M. Giulietti, G.E. De Souza, R.R. Dos Santos, M.B.P. Soares and C.F. Villarreal, J. Pharm. Pharmacol., 62, 205 (2010); doi:10.1211/jpp.62.02.0008.
X.Y. Huang, Z.J. Shan, H.L. Zhai, L. Su and X.Y. Zhang, Chem. Biol. Drug Des., 78, 651 (2011); doi:10.1111/j.1747-0285.2011.01195.x.
J.F. Vasconcelos, M.M. Teixeira, J.M. Barbosa-Filho, M.F. Agra, X.P. Nunes, A.M. Giulietti, R. Ribeiro-Dos-Santos and M.B. Soares, Eur. J. Pharmacol., 609, 126 (2009); doi:10.1016/j.ejphar.2009.03.027.
J. Neyts, E.D. Clercq, R. Singha, Y.H. Chang, A.R. Das, S.K. Chakraborty, S.C. Hong, S.-C. Tsay, M.-H. Hsu and J.R. Hwu, Med. Chem., 52, 1486 (2009); doi:10.1021/jm801240d.
B.S. Yun, I.N. Lee, I.J. Ryoo and I.D. Yoo, J. Nat. Prod., 64, 1238 (2001); doi:10.1021/np0100946.
C. Gnerre, M. Catto, F. Leonetti, P. Weber, P.A. Carrupt, C. Altomare, A. Carotti and B.J. Testa, Med. Chem., 43, 4747 (2000); doi:10.1021/jm001028o.
F. Borges, F. Roleira, N. Milhazes, E. Uriarte and L. Santana, Front. Med. Chem. Online, 4, 23 (2009).
D. Viña, M.J. Matos, M. Yáñez, L. Santana and E. Uriarte, Med. Chem. Comm., 3, 213 (2012); doi:10.1039/C1MD00221J.
G. Esteban, J. Allan, A. Samadi, A. Mattevi, M. Unzeta, J. Marco-Contelles, C. Binda and R.R. Ramsay, Biochim. Biophys. Acta, 1844, 1104 (2014); doi:10.1016/j.bbapap.2014.03.006.
C.A. Lipinski, F. Lombardo, B.W. Dominy and P.J. Feeney, Adv. Drug Deliv. Rev., 46, 3 (2001); doi:10.1016/S0169-409X(00)00129-0.
C.A. Lipinski, Drug Discov. Today. Technol., 1, 337 (2004); doi:10.1016/j.ddtec.2004.11.007.
Z. Yang, K. Lasker, D. Schneidman-Duhovny, B. Webb, C.C. Huang, E.F. Pettersen, T.D. Goddard, E.C. Meng, A. Sali and T.E. Ferrin, J. Struct. Biol., 179, 269 (2012); doi:10.1016/j.jsb.2011.09.006.
Y. Duan, C. Wu, S. Chowdhury, M.C. Lee, G. Xiong, W. Zhang, R. Yang, P. Cieplak, R. Luo, T. Lee, J. Caldwell, J. Wang and P. Kollman, J. Comput. Chem. CME, 24, 1999 (2003); doi:10.1002/jcc.10349.
O. Trott and A.J. Olson, J. Comput. Chem., 31, 455 (2010); doi:10.1002/jcc.21334.
K. Hu, L. Zhang, X. Li and S. Zhao, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 878, 3156 (2010); doi:10.1016/j.jchromb.2010.09.030.
M.B.H. Youdim and P.F. Riederer, Neurology, 63, S32 (2004); doi:10.1212/WNL.63.7_suppl_2.S32.
A. Samadi, M. de la Fuente Revenga, C. Pérez, I. Iriepa, I. Moraleda, M.I. Rodríguez-Franco and J. Marco-Contelles, Eur. J. Med. Chem., 67, 64 (2013); doi:10.1016/j.ejmech.2013.06.021.
H. Ayachi, M. Merad and S. Ghalem, Int. J. Pharm. Sci. Rev. Res., 23, 87 (2013).
W. Soufi, M. Merad, F. Boukli and S. Ghalem, Adv. Mol. Imaging, 1, 17 (2011); doi:10.4236/ami.2011.12003.