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Cobalt(II) Complex of 2,4-Diaminopyrimidine-5-(3,4,5-trimethoxy benzyl)pyrimidine: Experimental and Theoretical Studies
Corresponding Author(s) : Peter A. Ajibade
Asian Journal of Chemistry,
Vol. 27 No. 4 (2015): Vol 27 Issue 4
Abstract
Cobalt(II) complex of 2,4-diamino-5-(3',4,5'-trimethoxybenzyl)pyrimidine (trimethoprim) with sulfur ions was synthesized and characterized by elemental analysis, FTIR and electronic spectroscopy. The Co(II) complex formulated as [Co(TMP)2S2] was confirmed by spectroscopic, single crystal X-ray studies to be in a distorted tetrahedral geometry. The compound contains two molecules of trimethoprim (TMP) and (S2)2– dianion. The (S2)2– dianion are linked together through non-covalent interactions. Computational analysis confirmed the existence of the dianion in which the each S– of the –S···S– dianion is linked together through non covalent interactions and the entire molecule stabilized by hydrogen bond networks. The Co-S bonds in the compound were confirmed though single crystal X-ray and computational studies to be single bonds rather than dithioxocobalt (Co=S) bonds.
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- P.A. Ajibade, G.A. Kolawole, P. O’Brien and M. Helliwell, J. Coord. Chem., 59, 1621 (2006); doi:10.1080/00958970500537838.
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- D.J. Feller, Comput. Chem., 17, 1571 (1996); doi:10.1002/(SICI)1096-987X(199610)17:13<1571::AID-JCC9>3.0.CO;2-P.
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References
N. Saha and S.K.J. Kar, J. Inorg. Nucl. Chem., 39, 195 (1977); doi:10.1016/0022-1902(77)80465-X.
E.A. Falco, L.G. Goodwin, G.H. Hitchings, I.M. Rollo and P.B. Russel, Br. J. Pharmacol., 6, 185 (1951); doi:10.1111/j.1476-5381.1951.tb00634.x.
J.J. Burchall, J.W. Corcoran and F.E. Hahn, Antibiotics, Springer, New York, Vol. 3, p. 312 (1975).
P.A. Ajibade, G.A. Kolawole, P. O’Brien and M. Helliwell, J. Coord. Chem., 59, 1621 (2006); doi:10.1080/00958970500537838.
P.A. Ajibade, G.A. Kolawole, P. O’Brien, J. Raftery and M. Helliwell, J. Coord. Chem., 61, 328 (2008); doi:10.1080/00958970701338770.
L.F. Kuyper, Computer Aided Drug Design: Methods and Applications, Marcel Dekker, New York, p. 327 (1989).
M. Frester, P.M. Furneri, E. Mezzasalma, V.M. Nicolosi and G. Pugeisi, Antimicrob. Agents Chemother., 40, 2865 (1996).
B.M. Cooke, N. Mohandas and R.L. Coppel, Semin. Hematol., 41, 173 (2004); doi:10.1053/j.seminhematol.2004.01.004.
D.T.W. Chu, J.J. Plattner and L. Katz, J. Med. Chem., 39, 3853 (1996); doi:10.1021/jm960294s.
J. Verhoef and A. Fluit, Biochem. Pharmacol., 71, 1036 (2006); doi:10.1016/j.bcp.2005.10.013.
L. Delhaes, H. Abessolo, L. Berry, P. Delcourt, L. Maciejewski, J. Brocard, D. Camus, D. Dive and C. Biot, Parasitol. Res., 87, 239 (2001); doi:10.1007/s004360000317.
P.A. Ajibade, G.A. Kolawole and P. O’Brien, Synth. React. Met.-Org. Inorg. Nano-Met. Chem., 37, 653 (2007); doi:10.1080/15533170701608957.
M. Navarro, F. Vasquez, R.A. Sanchez-Delgado, H. Perez, V. Sinou and J. Schrevel, J. Med. Chem., 47, 5204 (2004); doi:10.1021/jm049792o.
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N. Stanley, P.T. Muthiah, S.J. Geib, P. Luger, M. Weber and M. Messerschmidt, Tetrahedron, 61, 7201 (2005); doi:10.1016/j.tet.2005.05.033.
G.R. Desiraju, Nature, 412, 397 (2001); doi:10.1038/35086640.
L.J. Prins, D.N. Reinhoudt and P. Timmerman, Angew. Chem. Int. Ed., 40, 2382 (2001); doi:10.1002/1521-3773(20010702)40:13<2382::AID-ANIE2382>3.0.CO;2-G.
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N. Shan, A.D. Bond and W. Jones, Tetrahedron Lett., 43, 3101 (2002); doi:10.1016/S0040-4039(02)00511-7.
Z. Otwinowski and W. Minor, in eds.: C.W. Carter Jr and R.M. Sweet, Methods in Enzymology, Macromolecular Crystallography, Part A, Academic Press, Vol. 276, pp. 307-326 (1997).
G.M. Sheldrick, SADABS, University of Gottingen, Germany (1996).
G.M. Sheldrick, SHELXL-97 and SHELXS-97, University of Gottingen, Germany (1997).
L.J. Barbour, J. Supramol. Chem., 1, 189 (2001); doi:10.1016/S1472-7862(02)00030-8.
A.A. Granovsky, Firefly, Version 7.1.G, Copyright©1994, Firefly Project, Moscow, Russia (2009); www.http://classic.chem.msu.su/gran/firefly/index.html.
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T.A. Keith, AIMAll (Version 12.06.03), TK Gristmill Software, Overland Park KS, USA (2012).
J.P. Foster and F.J. Weinhold, J. Am. Chem. Soc., 102, 7211 (1980); doi:10.1021/ja00544a007.
A.E. Reed, L.A. Curtiss and F. Weinhold, Chem. Rev., 88, 899 (1988); doi:10.1021/cr00088a005.
M.W. Schmidt, K.K. Baldridge, J.A. Boatz, S.T. Elbert, M.S. Gordon, J.H. Jensen, S. Koseki, N. Matsunaga, K.A. Nguyen, S. Su, T.L. Windus, M. Dupuis and J.A. Montgomery, J. Comput. Chem., 14, 1347 (1993); doi:10.1002/jcc.540141112.
A.E. Reed, R.B. Weinstock and F. Weinhold, J. Chem. Phys., 83, 735 (1985); doi:10.1063/1.449486.
C. Adamo and V. Barone, J. Chem. Phys., 110, 6158 (1999); doi:10.1063/1.478522.
D.J. Feller, Comput. Chem., 17, 1571 (1996); doi:10.1002/(SICI)1096-987X(199610)17:13<1571::AID-JCC9>3.0.CO;2-P.
K.L. Schuchardt, B.T. Didier, T. Elsethagen, L. Sun, V. Gurumoorthi, J. Chase, J. Li and T.L. Windus, J. Chem. Inf. Model., 47, 1045 (2007); doi:10.1021/ci600510j.
W.J. Stevens, M. Krauss, H. Basch and P.G. Jasien, Can. J. Chem., 70, 612 (1992); doi:10.1139/v92-085.
A.D. Becke, J. Chem. Phys., 98, 5648 (1993); doi:10.1063/1.464913.
K.D. Dobbs and W.J. Hehre, J. Comput. Chem., 8, 861 (1987); doi:10.1002/jcc.540080614.
B. Marchal, P. Carbonniére, D. Begue and C. Pouchan, Chem. Phys. Lett., 453, 49 (2008); doi:10.1016/j.cplett.2007.12.079.
R. Marchal, P. Carbonnière and C. Pouchan, Comput. Theoret. Chem., 990, 100 (2012); doi:10.1016/j.comptc.2011.10.026.
M.J. Calhorda and P.E.M. Lopes, J. Organomet. Chem., 609, 53 (2000); doi:10.1016/S0022-328X(00)00235-7.
P.S. Liyanage, R.M. de Silva and K.M.N. de Silva, J. Mol. Struct. (Theochem.), 639, 195 (2003); doi:10.1016/j.theochem.2003.08.009.
D. Tiana, Ph.D. Thesis, Organometallic Chemistry from the Interacting Quantum Atoms Approach, Universitàdegli Studi di Milano, Milano, pp. 18-19, 46 (2009/2010).
J.A. Platts, J. Overgaard, C. Jones, B.B. Iversen and A. Stasch, J. Phys. Chem. A, 115, 194 (2011); doi:10.1021/jp109547w.
B. Simo, L. Perello, R. Ortiz, A. Castineiras, J. Latorre and E. Canton, J. Inorg. Biochem., 81, 275 (2000); doi:10.1016/S0162-0134(00)00118-5.
J.M. Tsangaris, D. Sotiropoulos and A.G. Galinos, Inorg. Nucl. Chem. Lett., 14, 375 (1978); doi:10.1016/0020-1650(78)80001-4.
A.B.P. Lever, Inorganic Electronic Spectroscopy, Elsevier, Amsterdam, (1984).
M.J. Al-Jeboori, A.J. Abdul-Ghani and A.J. Al-Karawi, Transition Met. Chem., 33, 925 (2008); doi:10.1007/s11243-008-9134-3.