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Synthesis, Crystal Structure and DFT Studies of 4-(1-Benzyl-5-methyl-1H-1,2,3-triazol-4-yl)-6-(o-tolyl)pyrimidin-2-amine
Corresponding Author(s) : S. Murugavel
Asian Journal of Chemistry,
Vol. 27 No. 3 (2015): Vol 27 Issue 3
Abstract
The compound (I), 4-(1-benzyl-5-methyl-1H-1,2,3-triazol-4-yl)-6-(o-tolyl)pyrimidin-2-amine (C21H20N6), was synthesized and structurally characterized by elemental analysis, 1H NMR and 13C NMR and single crystal X-ray diffraction. The compound crystallizes as a colourless needle shaped in the monoclinic system, space group P21/n with cell constants: a = 11.2942(16) Å, b = 16.1209(18) Å, c = 10.6253(14) Å, a = g = 90°, b = 106.898 (5)°, V = 1851 (4) Å3, Z = 4. In the compound, the triazole and the pyrimidine rings are essentially planar. The molecular conformation is stabilized by an intramolecular C-H…N hydrogen bond, which generates an S(6) ring motif. The crystal packing is stabilized by intermolecular N-H…N and C-H…p hydrogen bonds thereby generating a three-dimensional supramolecular network. The molecular geometry was also optimized using density functional theory using (DFT/B3LYP) method with the 6-311G (d, p) basis set and compared with the experimental data.
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- J. Morales-Sanfrutos, M. Ortega-Munoz, J. Lopez-Jaramillo, F. Hernandez-Mateo and F. Santoyo-Gonzalez, J. Org. Chem., 73, 7768 (2008); doi:10.1021/jo801325c.
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References
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D.R. Buckle, C.J.M. Rockell, H. Smith and B.A. Spicer, J. Med. Chem., 29, 2262 (1986); doi:10.1021/jm00161a022.
M.J. Giffin, H. Heaslet, A. Brik, Y.C. Lin, G. Cauvi, C.H. Wong, D.E. McRee, J.H. Elder, C.D. Stout and B.E. Torbett, J. Med. Chem., 51, 6263 (2008); doi:10.1021/jm800149m.
S. Wang, Q. Wang, Y. Wang, L. Liu, X. Weng, G. Li, X. Zhang and X. Zhou, Bioorg. Med. Chem. Lett., 18, 6505 (2008); doi:10.1016/j.bmcl.2008.10.047.
H.I. El-Subbagh, S.M. Abu-Zaid, M.A. Mahran, F.A. Badria and A.M. Al-Obaid, J. Med. Chem., 43, 2915 (2000); doi:10.1021/jm000038m.
A.R. Trivedi, ARKIVOC, 131 (2008); doi:10.3998/ark.5550190.0009.b13.
S. Nagarajan, P. Shanmugavelan, M. Sathishkumar, R. Selvi, A. Ponnuswamy, H. Harikrishnan and V. Shanmugaiah, Chin. Chem. Lett., 25, 419 (2014); doi:10.1016/j.cclet.2013.12.017.
W. Koch and M.C.A. Holthausen, A Chemistry Guide to Density Functional Theory, Wiley-VCH, Weinheim, New York, Chichester (2000).
R.G. Parr and R.G. Yang, Density Functional Theory of Atoms and Molecules, Oxford University Press, New York, USA (1989).
APEX-II and SAINT-Plus (Version 7.06a), Bruker AXS Inc. Madison, Wisconsin, USA (2004).
G.M. Sheldrick, SHELXS97, A Program for Crystal Structure Solution, University of Göttingen: Germany (1997).
L.J. Farrugia, J. Appl. Cryst., 32, 837 (1999); doi:10.1107/S0021889899006020.
G.M. Sheldrick, SHELXL97, A Program for Crystal Structure Refinement, University of Göttingen: Germany (1997).
A.L. Spek, J. Appl. Cryst., 36, 7 (2003); doi:10.1107/S0021889802022112.
L.J. Farrugia, J. Appl. Cryst., 30, 565 (1997); doi:10.1107/S0021889897003117.
I.J. Bruno, J.C. Cole, P.R. Edgington, M.K. Kessler, C.F. Macrae, P. McCabe, J. Pearson and R. Taylor, Acta Crystallogr. B, 58, 389 (2002); doi:10.1107/S0108768102003324.
A.D. Becke, J. Chem. Phys., 98, 5648 (1993); doi:10.1063/1.464913.
C.T. Lee, W.T. Yang and R.G. Parr, Phys. Rev. B, 37, 785 (1988); doi:10.1103/PhysRevB.37.785.
R. Ditchfield, W.J. Hehre and J.A. Pople, J. Chem. Phys., 54, 724 (1971); doi:10.1063/1.1674902.
R. Dennington II, T. Keith and J. Millam, Gauss View Version 4.1.2, Semichem Inc., Shawnee Mission, KS, (2007).
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C.C. Huang, R.L. Wu, Y.H. Lo, W.R. Lai and C.H. Lin, Acta. Cryst., E66, o1690 (2010); doi:10.1107/S1600536810022531.
J.I. Sarmiento-Sánchez, G. Aguirre and I.A. Rivero, Acta. Cryst., E67, o1856 (2011); doi:10.1107/S1600536811019994.
J. Bernstein, R.E. Davis, L. Shimoni and N.L. Chang, Angew. Chem. Int. Ed. Engl., 34, 1555 (1995); doi:10.1002/anie.199515551.
F.F. Jian, P.S. Zhao, Z.S. Bai and L. Zhang, Struct. Chem., 16, 635 (2005); doi:10.1007/s11224-005-8254-z.