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3-(Substituted Aryl/alkyl)-5-((E)-4-((E)-(Substituted Aryl/alkyl)methyl)benzylidene)thiazolidin-2,4-dione Molecules: Design, ADME Studies and Molecular Docking Analysis as Potential Antimicrobial and Antiproliferative Agents
Corresponding Author(s) : Rakesh Kumar Marwaha
Asian Journal of Chemistry,
Vol. 34 No. 9 (2022): Vol 34 Issue 9
Abstract
A library comprising of 60 synthesizable compounds from three different series having 20 compounds in each series of 3-(furan-2-carbonyl)-5-((E)-4-((E)-(substituted aryl/alkyl)methyl)benzylidene)thiazolidine-2,4-dione (FC-1 to FC-20), 3-(butyl)-5-((E)-4-((E)-(substituted aryl/alkyl)methyl)benzylidene)thiazolidine-2,4-dione (NB-1 to NB-20) and 3-(allyl)-5-((E)-4-((E)-(substituted aryl/alkyl)methyl)benzylidene)thiazolidine-2,4-dione (NA-1 to NA-20) was designed and screened for antimicrobial and anticancer potential by molecular docking studies using S. aureus GyrB ATPase (PDB code: 3U2D) and CDK-8 (PDB code: 5FGK) proteins as possible drug targets, respectively by Schrödinger-Maestro v13.2. Molecular docking studies revealed, analogues NB-3 (docking score = -6.626), NA-3 (docking score = -6.315) and FC-20 (docking score = -5.552) displayed best docking score in each series, respectively against 3U2D and molecules NB-2 (docking score = -6.517), NA-20 (docking score = -7.668) and FC-12 (docking score = -4.931) exhibited best docking score in each series, respectively against 5FGK having better interaction with crucial amino acid. ADME results revealed all the analogues have significant scores within Qikprop range and also in close agreement with the Pfizer’s rule of five. These analogues can be used as lead structures for the development/discovery of new anticancer and antimicrobial agents.
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- S.A. Muhammad and N. Fatima, Pharmacogn. Mag., 11, 123 (2015); https://doi.org/10.4103/0973-1296.157712
- L.G. Ferreira, R.N. dos Santos, G. Oliva and A.D. Andricopulo, Molecules, 20, 13384 (2015); https://doi.org/10.3390/molecules200713384
- T N Thompson, Curr. Drug. Metab., 1, 215 (2000); https://doi.org/10.2174/1389200003339018
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- M.A. Salem, A. Ragab, A. El-Khalafawy, A.H. Makhlouf, A.A. Askar and Y.A. Ammar, Bioorg. Chem., 96, 103619 (2020); https://doi.org/10.1016/j.bioorg.2020.103619
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- M.V. Dannappel, D. Sooraj, J.J. Loh and R. Firestein, Front. Cell Dev. Biol., 6, 171 (2019); https://doi.org/10.3389/fcell.2018.00171
- P. Czodrowski, A. Mallinger, D. Wienke, C. Esdar, O. Pöschke, M. Busch, F. Rohdich, S.A. Eccles, M.J. Ortiz-Ruiz, R. Schneider, F.I. Raynaud, P.A. Clarke, D. Musil, D. Schwarz, T. Dale, K. Urbahns, J. Blagg and K. Schiemann, J. Med. Chem., 59, 9337 (2016); https://doi.org/10.1021/acs.jmedchem.6b00597
- H. Kumar, A. Deep and R.K. Marwaha, BMC Chem., 14, 25 (2020); https://doi.org/10.1186/s13065-020-00678-2
- A.P.G. Macabeo, L.A.E. Pilapil, K.Y.M. Garcia, M.T.J. Quimque, C. Phukhamsakda, A.J.C. Cruz, K.D. Hyde and M. Stadler, Molecules, 25, 965 (2020); https://doi.org/10.3390/molecules25040965
- S. Tahlan, S. Kumar, K. Ramasamy, S.M. Lim, S.A.A. Shah, V. Mani and B. Narasimhan, BMC Chem., 13, 90 (2019); https://doi.org/10.1186/s13065-019-0608-5
- L. Schrödinger, QikProp, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
- L. Schrödinger, Ligprep, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
- L. Schrödinger, Receptor Grid Generation, GLIDE, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
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- E.B. Lenselink, J. Louvel, A.F. Forti, J.P.D. van Veldhoven, H. de Vries, T. Mulder-Krieger, F.M. McRobb, A. Negri, J. Goose, R. Abel, H.W.T. van Vlijmen, L. Wang, E. Harder, W. Sherman, A.P. IJzerman and T. Beuming, ACS Omega, 1, 293 (2016); https://doi.org/10.1021/acsomega.6b00086
- R.A. Friesner, R.B. Murphy, M.P. Repasky, L.L. Frye, J.R. Greenwood, T.A. Halgren, P.C. Sanschagrin and D.T. Mainz, J. Med. Chem., 49, 6177 (2006); https://doi.org/10.1021/jm051256o
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- F. Bassyouni, M.E. Hefnawi, A.E. Rashed and M. Abdel Rehim, Drug Des., 6, 1 (2017); https://doi.org/10.4172/2169-0138.1000148
References
S.A. Muhammad and N. Fatima, Pharmacogn. Mag., 11, 123 (2015); https://doi.org/10.4103/0973-1296.157712
L.G. Ferreira, R.N. dos Santos, G. Oliva and A.D. Andricopulo, Molecules, 20, 13384 (2015); https://doi.org/10.3390/molecules200713384
T N Thompson, Curr. Drug. Metab., 1, 215 (2000); https://doi.org/10.2174/1389200003339018
F. Wu, Y. Zhou, L. Li, X. Shen, G. Chen, X. Wang, X. Liang, M. Tan and Z. Huang, Front Chem., 8, 726 (2020); https://doi.org/10.3389/fchem.2020.00726
M.A. Salem, A. Ragab, A. El-Khalafawy, A.H. Makhlouf, A.A. Askar and Y.A. Ammar, Bioorg. Chem., 96, 103619 (2020); https://doi.org/10.1016/j.bioorg.2020.103619
M. Durcik, P. Tammela, M. Baranèoková, T. Tomašiè, J. Ilaš, D. Kikelj and N. Zidar, ChemMedChem, 13, 186 (2018); https://doi.org/10.1002/cmdc.201700549
S.B. Korrapati, P. Yedla, G.G. Pillai, F. Mohammad, P. Bhamidipati, V.R.R. Ch, R. Amanchy, R. Syed and A. Kamal, Biomed. Pharmacother., 134, 111132 (2021); https://doi.org/10.1016/j.biopha.2020.111132
W. Dan and J. Dai, Eur. J. Med. Chem., 187, 111980 (2020); https://doi.org/10.1016/j.ejmech.2019.111980
E.A. Fayed, E.S. Nosseir, A. Atef and S.A. El-Kalyoubi, Mol. Divers., 26, 341 (2022); https://doi.org/10.1007/s11030-021-10224-4
T.S. Ibrahim, A.J. Almalki, A.H. Moustafa, R.M. Allam, G.E.A. AbuoRahma, H.I. El Subbagh and M.F.A. Mohamed, Bioorg. Chem., 111, 104885 (2021); https://doi.org/10.1016/j.bioorg.2021.104885
A. Aboelmagd, S.M. El Rayes, M.S. Gomaa, W. Fathalla, I.A.I. Ali, M.S. Nafie, F.H. Pottoo, F.A. Khan and M.M. Ibrahim, ACS Omega, 6, 5244 (2021); https://doi.org/10.1021/acsomega.0c05263
S. Osman, E. Mohammad, M. Lidschreiber, A. Stuetzer, F.L. Bazsó, K.C. Maier, H. Urlaub and P. Cramer, J. Biol. Chem., 296, 100734 (2021); https://doi.org/10.1016/j.jbc.2021.100734
M. Kumafuji, H. Umemura, T. Furumoto, R. Fukasawa, A. Tanaka and Y. Ohkuma, Genes Cells, 19, 582 (2014); https://doi.org/10.1111/gtc.12155
Y.C. Li, T.C. Chao, H.J. Kim, T. Cholko, S.F. Chen, G. Li, L. Snyder, K. Nakanishi, C.E. Chang, K. Murakami, B.A. Garcia, T.G. Boyer and K.L. Tsai, Sci. Adv., 7, eabd 4484 (2021); https://doi.org/10.1126/sciadv.abd4484
M.V. Dannappel, D. Sooraj, J.J. Loh and R. Firestein, Front. Cell Dev. Biol., 6, 171 (2019); https://doi.org/10.3389/fcell.2018.00171
P. Czodrowski, A. Mallinger, D. Wienke, C. Esdar, O. Pöschke, M. Busch, F. Rohdich, S.A. Eccles, M.J. Ortiz-Ruiz, R. Schneider, F.I. Raynaud, P.A. Clarke, D. Musil, D. Schwarz, T. Dale, K. Urbahns, J. Blagg and K. Schiemann, J. Med. Chem., 59, 9337 (2016); https://doi.org/10.1021/acs.jmedchem.6b00597
H. Kumar, A. Deep and R.K. Marwaha, BMC Chem., 14, 25 (2020); https://doi.org/10.1186/s13065-020-00678-2
A.P.G. Macabeo, L.A.E. Pilapil, K.Y.M. Garcia, M.T.J. Quimque, C. Phukhamsakda, A.J.C. Cruz, K.D. Hyde and M. Stadler, Molecules, 25, 965 (2020); https://doi.org/10.3390/molecules25040965
S. Tahlan, S. Kumar, K. Ramasamy, S.M. Lim, S.A.A. Shah, V. Mani and B. Narasimhan, BMC Chem., 13, 90 (2019); https://doi.org/10.1186/s13065-019-0608-5
L. Schrödinger, QikProp, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
L. Schrödinger, Ligprep, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
L. Schrödinger, Receptor Grid Generation, GLIDE, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
L. Schrödinger, Ligand Docking, GLIDE, Schrödinger Software Suite, Schrödinger LLC: New York (2022).
E.B. Lenselink, J. Louvel, A.F. Forti, J.P.D. van Veldhoven, H. de Vries, T. Mulder-Krieger, F.M. McRobb, A. Negri, J. Goose, R. Abel, H.W.T. van Vlijmen, L. Wang, E. Harder, W. Sherman, A.P. IJzerman and T. Beuming, ACS Omega, 1, 293 (2016); https://doi.org/10.1021/acsomega.6b00086
R.A. Friesner, R.B. Murphy, M.P. Repasky, L.L. Frye, J.R. Greenwood, T.A. Halgren, P.C. Sanschagrin and D.T. Mainz, J. Med. Chem., 49, 6177 (2006); https://doi.org/10.1021/jm051256o
A. Deep, J. Singh, M. Kumar, R. Mansuri and G.C. Sahoo, J. Pharm. Bioallied Sci., 8, 188 (2016); https://doi.org/10.4103/0975-7406.171682
F. Bassyouni, M.E. Hefnawi, A.E. Rashed and M. Abdel Rehim, Drug Des., 6, 1 (2017); https://doi.org/10.4172/2169-0138.1000148