Copyright (c) 2016 AJC
This work is licensed under a Creative Commons Attribution 4.0 International License.
Molecular Docking Simulation of Small Diverse Chemical Molecules Based Virtual Screening for Treatment of Tuberculosis
Corresponding Author(s) : Mohammad Rizwan Khan
Asian Journal of Chemistry,
Vol. 28 No. 12 (2016): Vol 28 Issue 12
Abstract
Molecular docking simulation based virtual screening with ligand library having benzotriazole derivatives have been performed to identify possible lead molecules to inhibit cytochrome P450 14a-sterol demethylase (CYP51) enzyme for treatment of tuberculor infection. Further these virtually screened lead molecules having best binding energy are tested for absorption, distribution, metabolism, elimination and toxicity (ADMET) profiling for design of novel lead inhibitors for treatment of tuberculosis infection by using phenomenon of bioisoesterism.
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- J.T. Achterberg, Center for Statistics and the Social Sciences,University of Washington, USA (2009).
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- S. Sundararajan, R. Balajee and M.S.D. Rajan, Int. J. Pharm. Pharm. Sci., 2, 83 (2010).
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- B. Iorga, D. Herlem, E. Barré and C. Guillou, J. Mol. Model., 12, 366 (2006); doi:10.1007/s00894-005-0057-z.
- E. Hazai, Z. Bikadi, F. Zsila and S.F. Lockwood, Bioorg. Med. Chem., 14, 6859 (2006); doi:10.1016/j.bmc.2006.06.045.
- D.F. Warner, S. Savvi, V. Mizrahi and S.S. Dawes, J. Bacteriol., 189, 3655 (2007); doi:10.1128/JB.00040-07.
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- S.Y. Nisa and A. Par, Victoria University of Wellington, New Zealand, pp. 1-23 (2010).
References
Y. Zhang, Annu. Rev. Pharmacol. Toxicol., 45, 529 (2005); doi:10.1146/annurev.pharmtox.45.120403.100120.
M.H. Almatarneh, M. Altarawneh, R.A. Poirier and I.A. Saraireh, J. Comput. Sci., 5, 568 (2014); doi:10.1016/j.jocs.2014.02.003.
P. Ioan, E. Carosati, M. Micucci, G. Cruciani, F. Broccatelli, B. S. Zhorov, A. Chiarini and R. Budriesi, Curr. Med. Chem., 18, 4901 (2011); doi:10.2174/092986711797535173.
D.C. Young, Computational Drug Design, John Wiley & Sons, Inc., New Jersey, pp. 171-175, (2009).
Y. Wang, X.W. Wang and Y.Y. Cheng, Chem. Biol. Drug Des., 68, 166 (2006); doi:10.1111/j.1747-0285.2006.00431.x.
J.T. Achterberg, Center for Statistics and the Social Sciences,University of Washington, USA (2009).
K. Sirisha, G. Achaiah and V.M. Reddy, Arch. Pharm., 343, 342 (2010); doi:10.1002/ardp.200900243.
H. Gevariya, B. Desai, V. Vora and A. Shah, Heterocycl. Commun., 7, 481 (2001); doi:10.1515/HC.2001.7.5.481.
B. Desai, D. Sureja, Y. Naliapara, A. Shah and A.K. Saxena, Bioorg. Med. Chem., 9, 1993 (2001); doi:10.1016/S0968-0896(01)00141-9.
G.M. Morris, R. Huey, W. Lindstrom, M.F. Sanner, R.K. Belew, D.S. Goodsell and A.J. Olson, J. Comput. Chem., 30, 2785 (2009); doi:10.1002/jcc.21256.
D.R. Johnson and F.J. Lovas, Chem. Phys. Lett., 15, 65 (1972); doi:10.1016/0009-2614(72)87017-9.
T. Tuccinardi, M. Grazia Cascio, V. Di Marzo, C. Manera, G. Ortore, G. Saccomanni and A. Martinelli, Lett. Drug Des. Discov., 4, 15 (2007); doi:10.2174/157018007778992829.
Y. Hamada, K. Hashiguchi, M. Tsuboi, Y. Koga and S.J. Kondo, J. Mol. Spectrosc., 105, 70 (1984); doi:10.1016/0022-2852(84)90104-8.
M. Famulok, J.S. Hartig and G. Mayer, Chem. Rev., 107, 3715 (2007); doi:10.1021/cr0306743.
C. Hetényi and D. van der Spoel, FEBS Lett., 580, 1447 (2006); doi:10.1016/j.febslet.2006.01.074.
C. Hetenyi and D. van der Spoel, Protein Sci., 11, 1729 (2002); doi:10.1110/ps.0202302.
Z. Bikadi, E. Hazai, F. Zsila and S.F. Lockwood, Bioorg. Med. Chem., 14, 5451 (2006); doi:10.1016/j.bmc.2006.04.047.
M. Kovacs, J. Tuth, C. Hetenyi, A. Malnasi-Csizmadia and J.R. Sellers, J. Biol. Chem., 279, 35557 (2004); doi:10.1074/jbc.M405319200.
S. Mujwar and K.R. Pardasani, Online J. Bioinformatics, 13, 285 (2012).
S. Mujwar and K.R. Pardasani, J. Med. Imag. Health Inform., 5, 07 (2015); doi:10.1166/jmihi.2015.1358.
N. Phosrithong and J. Ungwitayatorn, Med. Chem. Res., 19, 817 (2010); doi:10.1007/s00044-009-9233-5.
S. Sundararajan, R. Balajee and M.S.D. Rajan, Int. J. Pharm. Pharm. Sci., 2, 83 (2010).
B. Gorelik and A. Goldblum, Protein, 71, 1373 (2008); doi:10.1002/prot.21847.
K. Mdluli and Z. Ma, Infect. Disord. Drug Targets, 7, 159 (2007); doi:10.2174/187152607781001763#sthash.P65EaJfE.dpuf.
S. Marino and D.E. Kirschner, J. Theor. Biol., 227, 463 (2004); doi:10.1016/j.jtbi.2003.11.023.
B. Iorga, D. Herlem, E. Barré and C. Guillou, J. Mol. Model., 12, 366 (2006); doi:10.1007/s00894-005-0057-z.
E. Hazai, Z. Bikadi, F. Zsila and S.F. Lockwood, Bioorg. Med. Chem., 14, 6859 (2006); doi:10.1016/j.bmc.2006.06.045.
D.F. Warner, S. Savvi, V. Mizrahi and S.S. Dawes, J. Bacteriol., 189, 3655 (2007); doi:10.1128/JB.00040-07.
K. Babaoglu, M.A. Page, V.C. Jones, M.R. McNeil, C. Dong, J.H. Naismith and R.E. Lee, Bioorg. Med. Chem. Lett., 13, 3227 (2003); doi:10.1016/S0960-894X(03)00673-5.
H.J. Baird, A&M University, Texas, pp. 1-34 (2007).
S.Y. Nisa and A. Par, Victoria University of Wellington, New Zealand, pp. 1-23 (2010).