This work is licensed under a Creative Commons Attribution 4.0 International License.
Solvation Dynamics of Oxadiazoles as Potential Candidate for Drug Preparation
Corresponding Author(s) : Sumit Kumar
Asian Journal of Chemistry,
Vol. 35 No. 4 (2023): Vol 35 Issue 4, 2023
Abstract
Oral ingestion is one of the popularly employed procedures for the drug delivery as the administration of drugs is easy compared to the other alternatives such as injection. Therefore, the drug preparation is affected by dissolution rate, metabolism as per system requirements, drug permeability as well as solubility of the drug. The current study focused on the solvation dynamics of oxadiazole derivatives to attain its candidature against drug preparation. Different derivatives are extensively explored using ab initio molecular dynamics and quantum chemical calculation tools. The molecular dynamics study depicts the total energy as the addition of kinetic as well as potential energies with the progress of simulation time in fs. Oxadiazole derivative solvation efficiency was also investigated, along with its main solvent interaction sites. Derivatives of 1,3,4-oxadiazole were analyzed to determine their band gap energies, softness, hardness, ionization potential, chemical potential, electrophilicity, nucleophilicity, electronegativity and also their pharmacological effects.
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- J. Boström, A. Hogner, A. Llinàs, E. Wellner and A.T. Plowright, J. Med. Chem., 55, 1817 (2012); https://doi.org/10.1021/jm2013248
- C.S. De Oliveira, B.F. Lira, J.M. Barbosa-Filho, J.G.F. Lorenzo and P.F. De Athayde-Filho, Molecules, 17, 10192 (2012); https://doi.org/10.3390/molecules170910192
- A. Siwach and P.K. Verma, BMC Chem., 14, 70 (2020); https://doi.org/10.1186/s13065-020-00721-2
- E.M. Lenz, A. Kenyon, S. Martin, D. Temesi, J. Clarkson-Jones and H. Tomkinson, J. Pharm. Biomed. Anal., 55, 500 (2011); https://doi.org/10.1016/j.jpba.2011.02.005
- S. Bala, S. Kamboj, A. Kajal, V. Saini and D.N. Prasad, BioMed Res. Int., 2014, 172791 (2014); https://doi.org/10.1155/2014/172791
- L. Wang, J. Cao, Q. Chen and M. He, J. Org. Chem., 80, 4743 (2015); https://doi.org/10.1021/acs.joc.5b00207
- M.Y. Wong, S. Krotkus, G. Copley, W. Li, C. Murawski, D. Hall, G.J. Hedley, M. Jaricot, D.B. Cordes, A.M.Z. Slawin, Y. Olivier, D. Beljonne, L. Muccioli, M. Moral, J.-C. Sancho-Garcia, M.C. Gather, I.D.W. Samuel and E. Zysman-Colman, ACS Appl. Mater. Interfaces, 10, 33360 (2018); https://doi.org/10.1021/acsami.8b11136
- M.J. Buzón, M. Massanella, J.M. Llibre, A. Esteve, V. Dahl, M.C. Puertas, J.M. Gatell, P. Domingo, R. Paredes, M. Sharkey, M. Stevenson, S. Palmer, B. Clotet, J. Blanco and J. Martinez-Picado, Nat. Med., 16, 460 (2010); https://doi.org/10.1038/nm.2111
- N.D. James, H. Payne, M. Borre, B.A. Zonnenberg, P. Beuzeboc, A. Caty, S. McIntosh, T. Morris, D. Phung and N.A. Dawson, BJU Int., 106, 966 (2010); https://doi.org/10.1111/j.1464-410X.2010.09638.x
- S. Vardan, H. Smulyan, S. Mookherjee and R. Eich, Clin. Pharmacol. Ther., 34, 290 (1983); https://doi.org/10.1038/clpt.1983.170
- J. Janardhanan, M. Chang and S. Mobashery, Curr. Opin. Microbiol., 33, 13 (2016); https://doi.org/10.1016/j.mib.2016.05.009
- M.A. Ali and M. Shaharyar, Bioorg. Med. Chem. Lett., 17, 3314 (2007); https://doi.org/10.1016/j.bmcl.2007.04.004
- Z. Peng, Z. Bao and M.E. Galvin, Adv. Mater., 10, 680 (1998); https://doi.org/10.1002/(SICI)1521-4095(199806)10:9<680::AID-ADMA680>3.0.CO;2-H
- X.-C. Li, A.B. Holmes, A. Kraft, S.C. Moratti, G.C.W. Spencer, F. Cacialli, J. Grüner and R.H. Friend, J. Chem. Soc. Chem. Commun., 2211 (1995); https://doi.org/10.1039/C39950002211
- H.N. Bhagavan and R.K. Chopra, Mitochondrion, 7, S78 (2007); https://doi.org/10.1016/j.mito.2007.03.003
- G.K.H. Tam, S.M. Charbonneau, F. Bryce, C. Pomroy and E. Sandi, Toxicol. Appl. Pharmacol., 50, 319 (1979); https://doi.org/10.1016/0041-008X(79)90157-1
- F. Neese, Wiley Interdiscip. Rev. Comput. Mol. Sci., 2, 73 (2012); https://doi.org/10.1002/wcms.81
- F. Neese, Wiley Interdiscip. Rev. Comput. Mol. Sci., 12, e1606 (2022); https://doi.org/10.1002/wcms.1606
- P. Fuentealba, P. Pérez and R. Contreras, J. Chem. Phys., 113, 2544 (2000); https://doi.org/10.1063/1.1305879
- P.W. Ayers and R.G. Parr, J. Am. Chem. Soc., 122, 2010 (2000); https://doi.org/10.1021/ja9924039
- W. Yang and R.G. Parr, Proc. Natl. Acad. Sci. USA, 82, 6723 (1985); https://doi.org/10.1073/pnas.82.20.6723
- R. Ahlrichs, M. Bär, M. Häser, H. Horn and C. Kölmel, Chem. Phys. Lett., 162, 165 (1989); https://doi.org/10.1016/0009-2614(89)85118-8
- C. Steffen, K. Thomas, U. Huniar, A. Hellweg, O. Rubner and A. Schroer, J. Comput. Chem., 31, 2967 (2010); https://doi.org/10.1002/jcc.21576
- A. Daina, O. Michielin and V. Zoete, Sci. Rep., 7, 42717 (2017); https://doi.org/10.1038/srep42717
- A. Daina, O. Michielin and V. Zoete, J. Chem. Inf. Model., 54, 3284 (2014); https://doi.org/10.1021/ci500467k
- A. Daina and V. Zoete, ChemMedChem, 11, 1117 (2016); https://doi.org/10.1002/cmdc.201600182
- A. Zarrouk, B. Hammouti, A. Dafali, M. Bouachrine, H. Zarrok, S. Boukhris and S.S. Al-Deyab, J. Saudi Chem. Soc., 18, 450 (2014); https://doi.org/10.1016/j.jscs.2011.09.011
- H. Wang, X. Wang, H. Wang, L. Wang and A. Liu, J. Mol. Model., 13, 147 (2006); https://doi.org/10.1007/s00894-006-0135-x
- A. Mishra, C. Verma, H. Lgaz, V. Srivastava, M. Quraishi and E.E. Ebenso, J. Mol. Liq., 251, 317 (2018); https://doi.org/10.1016/j.molliq.2017.12.011
- E.E. Ebenso, T. Arslan, F. Kandemirli, I. Love, C. Ögretir, M. Saracoglu and S.A. Umoren, Int. J. Quantum Chem., 110, 2614 (2010); https://doi.org/10.1002/qua.22430
- M. El Azzouzi, A. Aouniti, S. Tighadouin, H. Elmsellem, S. Radi, B. Hammouti, A. El Assyry, F. Bentiss and A. Zarrouk, J. Mol. Liq., 221, 633 (2016); https://doi.org/10.1016/j.molliq.2016.06.007
References
J. Boström, A. Hogner, A. Llinàs, E. Wellner and A.T. Plowright, J. Med. Chem., 55, 1817 (2012); https://doi.org/10.1021/jm2013248
C.S. De Oliveira, B.F. Lira, J.M. Barbosa-Filho, J.G.F. Lorenzo and P.F. De Athayde-Filho, Molecules, 17, 10192 (2012); https://doi.org/10.3390/molecules170910192
A. Siwach and P.K. Verma, BMC Chem., 14, 70 (2020); https://doi.org/10.1186/s13065-020-00721-2
E.M. Lenz, A. Kenyon, S. Martin, D. Temesi, J. Clarkson-Jones and H. Tomkinson, J. Pharm. Biomed. Anal., 55, 500 (2011); https://doi.org/10.1016/j.jpba.2011.02.005
S. Bala, S. Kamboj, A. Kajal, V. Saini and D.N. Prasad, BioMed Res. Int., 2014, 172791 (2014); https://doi.org/10.1155/2014/172791
L. Wang, J. Cao, Q. Chen and M. He, J. Org. Chem., 80, 4743 (2015); https://doi.org/10.1021/acs.joc.5b00207
M.Y. Wong, S. Krotkus, G. Copley, W. Li, C. Murawski, D. Hall, G.J. Hedley, M. Jaricot, D.B. Cordes, A.M.Z. Slawin, Y. Olivier, D. Beljonne, L. Muccioli, M. Moral, J.-C. Sancho-Garcia, M.C. Gather, I.D.W. Samuel and E. Zysman-Colman, ACS Appl. Mater. Interfaces, 10, 33360 (2018); https://doi.org/10.1021/acsami.8b11136
M.J. Buzón, M. Massanella, J.M. Llibre, A. Esteve, V. Dahl, M.C. Puertas, J.M. Gatell, P. Domingo, R. Paredes, M. Sharkey, M. Stevenson, S. Palmer, B. Clotet, J. Blanco and J. Martinez-Picado, Nat. Med., 16, 460 (2010); https://doi.org/10.1038/nm.2111
N.D. James, H. Payne, M. Borre, B.A. Zonnenberg, P. Beuzeboc, A. Caty, S. McIntosh, T. Morris, D. Phung and N.A. Dawson, BJU Int., 106, 966 (2010); https://doi.org/10.1111/j.1464-410X.2010.09638.x
S. Vardan, H. Smulyan, S. Mookherjee and R. Eich, Clin. Pharmacol. Ther., 34, 290 (1983); https://doi.org/10.1038/clpt.1983.170
J. Janardhanan, M. Chang and S. Mobashery, Curr. Opin. Microbiol., 33, 13 (2016); https://doi.org/10.1016/j.mib.2016.05.009
M.A. Ali and M. Shaharyar, Bioorg. Med. Chem. Lett., 17, 3314 (2007); https://doi.org/10.1016/j.bmcl.2007.04.004
Z. Peng, Z. Bao and M.E. Galvin, Adv. Mater., 10, 680 (1998); https://doi.org/10.1002/(SICI)1521-4095(199806)10:9<680::AID-ADMA680>3.0.CO;2-H
X.-C. Li, A.B. Holmes, A. Kraft, S.C. Moratti, G.C.W. Spencer, F. Cacialli, J. Grüner and R.H. Friend, J. Chem. Soc. Chem. Commun., 2211 (1995); https://doi.org/10.1039/C39950002211
H.N. Bhagavan and R.K. Chopra, Mitochondrion, 7, S78 (2007); https://doi.org/10.1016/j.mito.2007.03.003
G.K.H. Tam, S.M. Charbonneau, F. Bryce, C. Pomroy and E. Sandi, Toxicol. Appl. Pharmacol., 50, 319 (1979); https://doi.org/10.1016/0041-008X(79)90157-1
F. Neese, Wiley Interdiscip. Rev. Comput. Mol. Sci., 2, 73 (2012); https://doi.org/10.1002/wcms.81
F. Neese, Wiley Interdiscip. Rev. Comput. Mol. Sci., 12, e1606 (2022); https://doi.org/10.1002/wcms.1606
P. Fuentealba, P. Pérez and R. Contreras, J. Chem. Phys., 113, 2544 (2000); https://doi.org/10.1063/1.1305879
P.W. Ayers and R.G. Parr, J. Am. Chem. Soc., 122, 2010 (2000); https://doi.org/10.1021/ja9924039
W. Yang and R.G. Parr, Proc. Natl. Acad. Sci. USA, 82, 6723 (1985); https://doi.org/10.1073/pnas.82.20.6723
R. Ahlrichs, M. Bär, M. Häser, H. Horn and C. Kölmel, Chem. Phys. Lett., 162, 165 (1989); https://doi.org/10.1016/0009-2614(89)85118-8
C. Steffen, K. Thomas, U. Huniar, A. Hellweg, O. Rubner and A. Schroer, J. Comput. Chem., 31, 2967 (2010); https://doi.org/10.1002/jcc.21576
A. Daina, O. Michielin and V. Zoete, Sci. Rep., 7, 42717 (2017); https://doi.org/10.1038/srep42717
A. Daina, O. Michielin and V. Zoete, J. Chem. Inf. Model., 54, 3284 (2014); https://doi.org/10.1021/ci500467k
A. Daina and V. Zoete, ChemMedChem, 11, 1117 (2016); https://doi.org/10.1002/cmdc.201600182
A. Zarrouk, B. Hammouti, A. Dafali, M. Bouachrine, H. Zarrok, S. Boukhris and S.S. Al-Deyab, J. Saudi Chem. Soc., 18, 450 (2014); https://doi.org/10.1016/j.jscs.2011.09.011
H. Wang, X. Wang, H. Wang, L. Wang and A. Liu, J. Mol. Model., 13, 147 (2006); https://doi.org/10.1007/s00894-006-0135-x
A. Mishra, C. Verma, H. Lgaz, V. Srivastava, M. Quraishi and E.E. Ebenso, J. Mol. Liq., 251, 317 (2018); https://doi.org/10.1016/j.molliq.2017.12.011
E.E. Ebenso, T. Arslan, F. Kandemirli, I. Love, C. Ögretir, M. Saracoglu and S.A. Umoren, Int. J. Quantum Chem., 110, 2614 (2010); https://doi.org/10.1002/qua.22430
M. El Azzouzi, A. Aouniti, S. Tighadouin, H. Elmsellem, S. Radi, B. Hammouti, A. El Assyry, F. Bentiss and A. Zarrouk, J. Mol. Liq., 221, 633 (2016); https://doi.org/10.1016/j.molliq.2016.06.007